Bioconductor
Tools for the analysis and comprehension of high-throughput genomic data using the R statistical programming language.
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Jupyter
Interactive analysis with the python or R programming languages; the R environment includes a family of Bioconductor packages.
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Dockstore
Dockstore is an open platform used by the GA4GH for sharing Docker-based tools described with the Common Workflow Language (CWL), the Workflow Description Language (WDL), or Nextflow (NFL).
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Terra
Terra is an analysis platform that allows users to access data, run analysis tools, and collaborate. Terra is powered by Google Cloud Platform, enabling the user to scale and manage billing of their own projects.
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Gen3
Gen3 is a cloud-based software platform for managing, analyzing, harmonizing, and sharing large datasets. Gen3 is an open source platform for developing data commons.
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Galaxy
Access thousands of tools via an intuitive graphical user interface for processing batch analysis with Galaxy Workflows and interactive downstream visualizations.
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NHGRI AnVIL Cloud Platform Now Supports Free Export of GTEx Data
In support of the evolving nature of the NHGRI mission, we are pleased to announce that researchers are now able to download controlled access GTEx V8 to local compute infrastructure without incurring egress fees.
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Get Started
View our training guides for onboarding to the Terra analysis engine.
Access Data
Learn how to request access to AnVIL's high-value, access controlled, genomic datasets.
Contribute Data
Work with the AnVIL team to contribute your consortium's data to AnVIL.
Featured Workspaces
The AnVIL project's featured workspaces demonstrate common genomic analysis pipelines deployed using data and tools available on AnVIL.
These analyses utilize unrestricted public data along with reproducible workflows, allowing researchers to clone and execute the workspaces as a learning exercise or for adapting to their own research.
GATK Best Practices for Germline SNPs & Indels
This is a fully reproducible example of Processing For Variant Discovery, HaplotypeCallerGVCF, and Joint Discovery workflows based on GATK Best Practices. Launch Workspace
GATK Best Practices for Somatic CNV Discovery
This workspace contains an example of the somatic copy number variation workflow, representing the Variant Discovery portion of the Somatic CNV Discovery pipeline. Launch Workspace
GWAS Pipeline Using Hail
This workspace serves as a basic tutorial for using Hail, a python-based package containing additional data types and methods for working with genomic data. Launch Workspace
inferCNV Tumor Single-Cell RNA-Seq Analysis Pipeline
The inferCNV workflow compares RNA from tumor samples with corresponding “normal” samples to identify evidence for copy number variations in tumors. Launch Workspace
Optimus Pipeline for Analysis of 3’ Single-Cell Transcriptomic Data
The Optimus pipeline processes 3-prime single-cell transcriptome data from the 10X Genomics v2 (and v3) assay. Launch Workspace
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